Preface

This is a user manual written using Bookdown, which provides a detailed guide for xOmicsShiny.

Cover Image: Overview of the xOmicsShiny modules. The Shiny application handles multi-omics data including transcriptomics, proteomics, metabolomics, and lipidomics data. The Comparison Result Merging (Grey) module integrates multi-omics data for downstream analysis. Data exploration modules (Blue) contain QC, DEGs, Heatmap, Expression, and Venn Diagram modules. Geneset Enrichment (Green) module performs GSEA and pathway analysis. Network modules (Bisque) include WGCNA, Correlation Network, and PCSF modules. Pattern and trend analysis (Orchid) consists of Pattern, Dose Response, Time Course, and Monotonic Trend modules.