Bookdown report of Mouse_brain_snRNAseq

Generated on 2023-04-07

Introduction

This is a summary report generated by scReport (part of scRNASequest pipeline) using Bookdown.

This report contains basic QC plots generated by the pipeline. If you turn on the filter_step when running scAnalyzer, this report will also display QC plots before and after filtering.

Please go through the figures carefully and decide the cutoffs for data filtering.

Project Overview

Here is a brief overview of the project and filtering criteria:

• Project Name: Mouse_brain_snRNAseq

• Project Title: Single-nucleus RNA-seq from adult mouse brain

• Filtering Option: TRUE

• Filtering Mitochondria: TRUE

• Filtering min.cells: 3

• Filtering min.features: 50

• Filtering highCount.cutoff: 10000

• Filtering highGene.cutoff: 3000

For more details, please check the config.yml file and related config.yml.*.log file:

• /E-MTAB-11115/config.yml