Introduction

As an essential part of the RNASequest framework, the Expression Analysis (EA) pipeline analyzes RNAseq data provided by the user, or from the NCBI/GEO database, and generates results for interactive visualization.

This is a summary report generated by EAreport (part of Expression Analysis) using Bookdown.

This report contains basic plots and tables generated by the pipeline.

Project overview

Here is a brief overview of the project:

  • Project Name: SRP039361

  • Species: human

  • Description: ****

  • Number of Samples: 55

  • Number of Groups: 7

  • Number of Genes/Proteins: 46186

  • Number of Comparisons: 1

  • Number of Samples in Each Group:

grp7 grp5 grp6 grp3 grp4 grp1 grp2
count 5 5 5 10 10 10 10

Project files

The EA pipeline also produced several files under the working directory:

  • notAdjusted_Covariate_PC_Results.rds

  • notAdjusted_Covariate_PC_Results.xlsx

  • notAdjusted_PCA_Plots.pdf

  • notAdjusted_Significant_Categorical_Covariates.pdf

  • notAdjusted_Significant_Numeric_Covariates.pdf

  • sequenceQC.pdf

  • sequenceQC.unionTop.TPM.csv

For more flexible and interactive visualization, please upload the following Rdata files to Quickomics.

  • SRP039361_estCount.rds

  • SRP039361_network.RData

  • SRP039361.RData

  • SRP039361.csv

The following sections are included in this bookdown report: