EA Slide Deck

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Quality control (QC) plots

QC: gene ratios. Top 1% gene of TPM

Quality control (QC) plots

QC: gene ratios. Top 10% gene of TPM

Quality control (QC) plots

QC: gene ratios. Top 30% gene of TPM

Quality control (QC) plots

QC: top expressed genes. Top gene by TPM

Quality control (QC) plots

QC: top expressed genes. Top gene by counts

Covariates plots

Covariates plots

PCA plots

Regular PCA plot

PCA plots

PCA of covariates

PCA plots

PCA of covariates

Volcano plots

To visulize the fold change and significance of DEGs in a comparison.

Heatmap plots

Heatmap of the top 1000 most variable genes

Heatmap plots

Heatmap of group comparisons