Introduction

As an essential part of the RNASequest framework, the Expression Analysis (EA) pipeline analyzes RNAseq data provided by the user, or from the NCBI/GEO database, and generates results for interactive visualization.

This is a summary report generated by EAreport (part of Expression Analysis) using Bookdown.

This report contains basic plots and tables generated by the pipeline.

Project overview

Here is a brief overview of the project:

  • Project Name: SRP094781

  • Species: human

  • Description: ****

  • Number of Samples: 109

  • Number of Groups: 4

  • Number of Genes/Proteins: 51264

  • Number of Comparisons: 3

  • Number of Samples in Each Group:

grp2 grp3 grp1 grp4
count 34 23 48 4

Project files

The EA pipeline also produced several files under the working directory:

  • notAdjusted_Covariate_PC_Results.rds

  • notAdjusted_Covariate_PC_Results.xlsx

  • notAdjusted_PCA_Plots.pdf

  • notAdjusted_Significant_Categorical_Covariates.pdf

  • notAdjusted_Significant_Numeric_Covariates.pdf

  • sequenceQC.pdf

  • sequenceQC.unionTop.TPM.csv

For more flexible and interactive visualization, please upload the following Rdata files to Quickomics.

  • SRP094781_estCount.rds

  • SRP094781_network.RData

  • SRP094781.RData

  • SRP094781.csv

The following sections are included in this bookdown report: